Yes, we can. 

Follow the below steps to disable the deduction types:

 

Step 1: Go to Employee> View Employees.

Step 2: Select the employee for whom you want to disable the deduction types (PF/ ESI)

Step 3: Upon clicking on employee name, all the tiles with the details of that employee will be displayed. 

Step 4: Now in Payroll Information tile, Click on edit option, select "NO" for which deduction type you want to exclude in payroll and then click on "Save" button.

Step 5: On clicking on save button, the confirmation message will be displayed.